diff --git a/CMakeLists.txt b/CMakeLists.txt
index fca8aa9686..edad1f7183 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -1268,6 +1268,9 @@ else()
         -fno-pic
         -fno-pie
         -faddrsig
+        -ffile-prefix-map="${CMAKE_CURRENT_SOURCE_DIR}"=.
+        -ffile-prefix-map="${BUN_DEPS_DIR}"=src/deps
+        -ffile-prefix-map="${BUN_DEPS_OUT_DIR}"=src/deps
     )
 endif()
 
diff --git a/scripts/env.sh b/scripts/env.sh
index e0ca4ccf39..1dad017409 100755
--- a/scripts/env.sh
+++ b/scripts/env.sh
@@ -55,8 +55,10 @@ fi
 export CMAKE_CXX_COMPILER=${CXX}
 export CMAKE_C_COMPILER=${CC}
 
-export CFLAGS='-O3 -fno-exceptions -fvisibility=hidden -fvisibility-inlines-hidden -mno-omit-leaf-frame-pointer -fno-omit-frame-pointer -fno-asynchronous-unwind-tables -fno-unwind-tables  '
-export CXXFLAGS='-O3 -fno-exceptions -fno-rtti -fvisibility=hidden -fvisibility-inlines-hidden -mno-omit-leaf-frame-pointer -fno-omit-frame-pointer -fno-asynchronous-unwind-tables -fno-unwind-tables -fno-c++-static-destructors '
+export FILE_PREFIX_MAP=" -ffile-prefix-map='${BUN_BASE_DIR}'=. -ffile-prefix-map='${BUN_DEPS_DIR}'=src/deps -ffile-prefix-map='${BUN_DEPS_OUT_DIR}'=src/deps "
+
+export CFLAGS="-O3 -fno-exceptions -fvisibility=hidden -fvisibility-inlines-hidden -mno-omit-leaf-frame-pointer -fno-omit-frame-pointer -fno-asynchronous-unwind-tables -fno-unwind-tables $FILE_PREFIX_MAP "
+export CXXFLAGS="-O3 -fno-exceptions -fno-rtti -fvisibility=hidden -fvisibility-inlines-hidden -mno-omit-leaf-frame-pointer -fno-omit-frame-pointer -fno-asynchronous-unwind-tables -fno-unwind-tables -fno-c++-static-destructors $FILE_PREFIX_MAP "
 
 # Add flags for LTO
 # We cannot enable LTO on macOS for dependencies because it requires -fuse-ld=lld and lld causes many segfaults on macOS (likely related to stack size)