### What does this PR do?
Makes isolated installs the default install strategy for projects with
workspaces in Bun v1.3.
Also fixes creating patches with `bun patch` and `--linker isolated`
Fixes#22693
### How did you verify your code works?
Added tests for node_modules renaming `bun patch` with isolated install.
---------
Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com>
Co-authored-by: Claude Bot <claude-bot@bun.sh>
Co-authored-by: Claude <noreply@anthropic.com>
